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    LOC4330408 pentatricopeptide repeat-containing protein At1g31920 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330408, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4330408
    Gene description
    pentatricopeptide repeat-containing protein At1g31920
    Locus tag
    OSNPB_020697500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 14.0), leaves after flowering (RPKM 12.2) and 4 other tissues See more
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    Genomic context

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    See LOC4330408 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (29171524..29173786, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (28681676..28683929, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene TOM1-like protein 1 Neighboring gene probable 4-coumarate--CoA ligase 2 Neighboring gene uncharacterized LOC4330409 Neighboring gene uncharacterized LOC4330410

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g31920
    Names
    Os02g0697500
    P0459B01.5-1
    P0459B01.5-2
    selenium-binding protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      29171524..29173786 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767759.3 → XP_015623245.1  pentatricopeptide repeat-containing protein At1g31920

      UniProtKB/TrEMBL
      A2X8K9, A3AAD8
      Conserved Domains (2) summary
      PLN03081
      Location:81 → 613
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:309 → 336
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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