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    LOC4338556 beta-glucosidase 19-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338556, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4338556
    Gene description
    beta-glucosidase 19-like
    Locus tag
    OSNPB_050365600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BGLU19; Os5bglu19
    Expression
    Broad expression in flower buds (RPKM 5.4), flowers (RPKM 4.3) and 5 other tissues See more
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    Genomic context

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    See LOC4338556 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (17630259..17634702)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (17530120..17534566)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278680 Neighboring gene pentatricopeptide repeat-containing protein At1g10270 Neighboring gene cell wall protein IFF7-like Neighboring gene beta-glucosidase 20-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-glucosidase 19
    Names
    LOC_Os05g30250
    OSJNBa0090H02.2
    OSJNBb0111K12.10
    P0683B02.14
    NP_001407324.1
    XP_015639293.1
    XP_015639294.1
    XP_066166334.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420395.1 → NP_001407324.1  beta-glucosidase 19 precursor

      Status: VALIDATED

      Source sequence(s)
      AK105546, AU085894, C72798, CF324914, CI117385, CI691856
      UniProtKB/Swiss-Prot
      A0A0N7KKM6, Q0DIT2, Q60DY5, Q75IT1
      UniProtKB/TrEMBL
      B9FP68

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      17630259..17634702
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310237.1 → XP_066166334.1  beta-glucosidase 19 isoform X1

      UniProtKB/TrEMBL
      B9FP68

    2. XM_015783807.3 → XP_015639293.1  beta-glucosidase 19 isoform X2

      UniProtKB/TrEMBL
      B9FP68
      Conserved Domains (1) summary
      cl23725
      Location:7 → 455
      Glyco_hydro_1; Glycosyl hydrolase family 1

    3. XM_015783808.3 → XP_015639294.1  beta-glucosidase 19 isoform X2

      UniProtKB/TrEMBL
      B9FP68
      Conserved Domains (1) summary
      cl23725
      Location:7 → 455
      Glyco_hydro_1; Glycosyl hydrolase family 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0DIT2.1 GenPept UniProtKB/Swiss-Prot:Q0DIT2

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