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    LOC4331559 protein NRT1/ PTR FAMILY 5.2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331559, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4331559
    Gene description
    protein NRT1/ PTR FAMILY 5.2
    Locus tag
    OSNPB_030138700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 43.6), roots after flowering (RPKM 28.6) and 4 other tissues See more
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    Genomic context

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    See LOC4331559 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2131975..2136744, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene death domain-associated protein 6 Neighboring gene protein unc-13 homolog Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene uncharacterized LOC9271320

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dipeptide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tripeptide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in dipeptide transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NRT1/ PTR FAMILY 5.2
    Names
    Os03g0138700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      2131975..2136744 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777400.2 → XP_015632886.1  protein NRT1/ PTR FAMILY 5.2

      UniProtKB/TrEMBL
      B8AMV1, Q0DVB4, Q10S13
      Conserved Domains (1) summary
      cd17417
      Location:44 → 576
      MFS_NPF5; NRT1/PTR family (NPF), subfamily 5 of the Major Facilitator Superfamily of transporters
    Nucleotide Protein
    Heading Accession and Version

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