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    LOC4345281 GMP synthase [glutamine-hydrolyzing] [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345281, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4345281
    Gene description
    GMP synthase [glutamine-hydrolyzing]
    Locus tag
    OSNPB_080326600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1136_A10.112
    Expression
    Ubiquitous expression in flower buds (RPKM 108.8), leaves before flowering (RPKM 62.6) and 6 other tissues See more
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    Genomic context

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    See LOC4345281 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (14356976..14360827)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L7a-1-like Neighboring gene glucan endo-1,3-beta-glucosidase 5 Neighboring gene subtilisin-like protease SBT5.3 Neighboring gene glycine-rich cell wall structural protein 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GMP synthase (glutamine-hydrolyzing) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GMP synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in GMP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345281
    Names
    Os08g0326600
    putative GMP synthetase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      14356976..14360827
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795288.2 → XP_015650774.1  uncharacterized protein LOC4345281

      UniProtKB/TrEMBL
      A0A0P0XEC6, Q8H4X9
      Conserved Domains (1) summary
      PLN02347
      Location:16 → 544
      PLN02347; GMP synthetase
    Nucleotide Protein
    Heading Accession and Version

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