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    LOC4352488 major pollen allergen Bet v 1-D/H [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352488, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4352488
    Gene description
    major pollen allergen Bet v 1-D/H
    Locus tag
    OSNPB_120555200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves after flowering (RPKM 674.8), roots after flowering (RPKM 346.4) and 2 other tissues See more
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    Genomic context

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    See LOC4352488 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (22591661..22593468)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene major allergen Dau c 1 Neighboring gene major pollen allergen Cor a 1 Neighboring gene major pollen allergen Bet v 1-G Neighboring gene probable galactinol--sucrose galactosyltransferase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice. Peng Y, et al. Mol Plant, 2008 May. PMID 19825552
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables abscisic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein phosphatase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in abscisic acid-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    major pollen allergen Bet v 1-D/H
    Names
    Os12g0555200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      22591661..22593468
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762865.2 → XP_015618351.1  major pollen allergen Bet v 1-D/H

      UniProtKB/TrEMBL
      A3CIC1, Q0IMQ1, Q2QNT0
      Conserved Domains (1) summary
      cd07816
      Location:6 → 150
      Bet_v1-like; Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins
    Nucleotide Protein
    Heading Accession and Version

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