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    LOC4351288 double-stranded RNA-binding protein 8-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351288, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4351288
    Gene description
    double-stranded RNA-binding protein 8-like
    Locus tag
    OSNPB_120109900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RBP; DRB1; DRB8; Odb1; OsDRB1
    Expression
    Ubiquitous expression in mature seeds (RPKM 9.9), flower buds (RPKM 7.0) and 6 other tissues See more
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    Genomic context

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    See LOC4351288 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (535869..540696, complement)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9272303 Neighboring gene pentatricopeptide repeat-containing protein At4g13650 Neighboring gene regulatory-associated protein of TOR 1-like Neighboring gene uncharacterized LOC4351290

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribonuclease III activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    double-stranded RNA-binding protein 8
    Names
    LOC_Os12g01916
    dsRNA binding protein RBP
    dsRNA-binding protein 1
    dsRNA-binding protein 8
    dsRNA-binding protein ODB1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404614.1 → NP_001391543.1  double-stranded RNA-binding protein 8 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK063972, AP014968
      UniProtKB/TrEMBL
      A0A0N7KTG4

    2. NM_001404615.1 → NP_001391544.1  double-stranded RNA-binding protein 8 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK103543, AP014968, CI089586, CI138496
      UniProtKB/Swiss-Prot
      H2KX80, Q0IQN6, Q4ZH87, Q9LRF5

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      535869..540696 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765340.2 → XP_015620826.1  double-stranded RNA-binding protein 8 isoform X2

      UniProtKB/Swiss-Prot
      Q0IQN6
      Conserved Domains (1) summary
      cl00054
      Location:117 → 184
      DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily

    2. XM_015765339.2 → XP_015620825.2  double-stranded RNA-binding protein 8 isoform X1

      Conserved Domains (4) summary
      cd00048
      Location:164 → 230
      DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
      sd00004
      Location:443 → 465
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:469 → 516
      PPR_2; PPR repeat family
      cl25449
      Location:443 → 483
      PPR_2; PPR repeat family

    RNA

    1. XR_001542363.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0IQN6.1 GenPept UniProtKB/Swiss-Prot:Q0IQN6

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