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    LOC4337007 imidazoleglycerol-phosphate dehydratase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337007, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4337007
    Gene description
    imidazoleglycerol-phosphate dehydratase
    Locus tag
    OSNPB_040617800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 31.5), leaves before flowering (RPKM 30.7) and 6 other tissues See more
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    Genomic context

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    See LOC4337007 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31897355..31901020)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31389656..31393319)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene peroxisomal ATPase PEX6 Neighboring gene uncharacterized LOC9270654 Neighboring gene germin-like protein 4-1 Neighboring gene pentatricopeptide repeat-containing protein At3g14580, mitochondrial Neighboring gene transfer RNA arginine (anticodon CCG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables imidazoleglycerol-phosphate dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-histidine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    imidazoleglycerol-phosphate dehydratase
    Names
    Os04g0617800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419869.1 → NP_001406798.1  imidazoleglycerol-phosphate dehydratase

      Status: VALIDATED

      Source sequence(s)
      AK073351
      UniProtKB/TrEMBL
      Q0JA36, Q25AR2, Q7FA25, Q7XTN6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      31897355..31901020
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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