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    LOC4349374 VAN3-binding protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349374, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4349374
    Gene description
    VAN3-binding protein
    Locus tag
    OSNPB_100560000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349374 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (22746937..22748874)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22054958..22056952)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136353613 Neighboring gene uncharacterized LOC4349373 Neighboring gene uncharacterized LOC107279217 Neighboring gene uncharacterized LOC136353612 Neighboring gene uncharacterized LOC112936622 Neighboring gene glycerol-3-phosphate acyltransferase 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    VAN3-binding protein
    Names
    Os10g0560000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      22746937..22748874
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758950.3 → XP_015614436.1  VAN3-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A5S6R8V2, A3C7A1, Q7XC71, Q8SB99
      Conserved Domains (2) summary
      pfam05703
      Location:33 → 247
      Auxin_canalis; Auxin canalisation
      pfam08458
      Location:260 → 363
      PH_2; Plant pleckstrin homology-like region

    2. XM_066304638.1 → XP_066160735.1  VAN3-binding protein isoform X2

    Nucleotide Protein
    Heading Accession and Version

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