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    LOC4327789 CASP-like protein 1C1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327789, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4327789
    Gene description
    CASP-like protein 1C1
    Locus tag
    OSNPB_010237000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsCASPL1C1; OsJ_001011
    Expression
    Biased expression in roots before flowering (RPKM 2.1), roots after flowering (RPKM 0.2) and 1 other tissue See more
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    Genomic context

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    See LOC4327789 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (7588177..7589690)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene protein NLP3-like Neighboring gene beta-amylase 1, chloroplastic-like Neighboring gene probable 2-carboxy-D-arabinitol-1-phosphatase Neighboring gene isoflavone reductase-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    CASP-like protein 1C1; cASP-like protein 1C1
    Names
    LOC_Os01g13560
    P0708G02.36

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401724.1 → NP_001388653.1  cASP-like protein 1C1

      Status: VALIDATED

      Source sequence(s)
      AK062426, AP014957
      UniProtKB/Swiss-Prot
      A0A0P0V043, A2WMK1, A2WMK7, Q9LI17

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      7588177..7589690
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778945.2 → XP_015634431.1  CASP-like protein 1C1

      UniProtKB/Swiss-Prot
      Q9LI17
      Conserved Domains (1) summary
      pfam04535
      Location:32 → 146
      DUF588; Domain of unknown function (DUF588)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LI17.1 GenPept UniProtKB/Swiss-Prot:Q9LI17

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