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    LOC4344413 uncharacterized LOC4344413 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344413, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4344413
    Gene description
    uncharacterized LOC4344413
    Locus tag
    OSNPB_080100800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 11.4), leaves before flowering (RPKM 11.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (63134..67932)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (58525..63385)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene ENHANCER OF AG-4 protein 2 Neighboring gene uncharacterized LOC4344411 Neighboring gene branchpoint-bridging protein Neighboring gene B3 domain-containing protein IDEF1-like Neighboring gene high mobility group B protein 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized LOC4344413
    Names
    B1147B12.11
    Os08g0100800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422367.1 → NP_001409296.1  uncharacterized LOC4344413

      Status: VALIDATED

      Source sequence(s)
      AK106602, AP014964
      UniProtKB/TrEMBL
      Q0J8P5, Q6Z1Z4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      63134..67932
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794187.3 → XP_015649673.1  uncharacterized LOC4344413 isoform X1

      Conserved Domains (1) summary
      pfam12579
      Location:207 → 240
      DUF3755; Protein of unknown function (DUF3755)

    2. XM_015794190.3 → XP_015649676.1  uncharacterized LOC4344413 isoform X3

      Conserved Domains (1) summary
      pfam12579
      Location:207 → 231
      DUF3755; Protein of unknown function (DUF3755)

    3. XM_066312827.1 → XP_066168924.1  uncharacterized LOC4344413 isoform X4

    4. XM_015794189.3 → XP_015649675.1  uncharacterized LOC4344413 isoform X2

      Conserved Domains (1) summary
      pfam12579
      Location:202 → 235
      DUF3755; Protein of unknown function (DUF3755)
    Nucleotide Protein
    Heading Accession and Version

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