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    LOC4345465 disease resistance protein RGA5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345465, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345465
    Gene description
    disease resistance protein RGA5-like
    Locus tag
    OSNPB_080387700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 2.5), flowers (RPKM 1.7) and 6 other tissues See more
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    Genomic context

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    See LOC4345465 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (18454753..18465614, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (18319083..18330023, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene endoglucanase 20-like Neighboring gene uncharacterized LOC4345464 Neighboring gene disease resistance protein RGA5-like Neighboring gene transfer RNA alanine (anticodon AGC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RGA5-like
    Names
    Os08g0387700
    Os08g0388001
    Os08g0388150
    P0434E03.28-2
    P0473F05.0-3
    disease resistance protein RPM1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      18454753..18465614 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792778.3 → XP_015648264.1  disease resistance protein RGA5-like

      UniProtKB/TrEMBL
      A0A0P0XG64, Q0J5Y6
      Conserved Domains (5) summary
      COG4886
      Location:629 → 811
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14798
      Location:49 → 166
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:636 → 658
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:235 → 492
      NB-ARC; NB-ARC domain
      pfam13191
      Location:209 → 322
      AAA_16; AAA ATPase domain
    Nucleotide Protein
    Heading Accession and Version

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