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    LOC107276217 uncharacterized LOC107276217 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 107276217, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC107276217
    Gene description
    uncharacterized LOC107276217
    Locus tag
    OSNPB_020828200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Os02g0828400
    Expression
    Broad expression in leaves before flowering (RPKM 103.0), roots after flowering (RPKM 64.7) and 5 other tissues See more
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    Genomic context

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    See LOC107276217 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35584876..35589249)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g38730 Neighboring gene signal peptidase complex catalytic subunit SEC11C Neighboring gene uncharacterized LOC4331227 Neighboring gene uncharacterized LOC4331231 Neighboring gene uncharacterized LOC9270603

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC107276217
    Names
    Os02g0828200
    P0452F04.36

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      35584876..35589249
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769852.2 → XP_015625338.1  uncharacterized protein LOC107276217

      UniProtKB/TrEMBL
      A0A0N7KGD5, A2XB94, Q6K7P8
      Conserved Domains (1) summary
      sd00006
      Location:342 → 372
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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