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    LOC4340905 damage-control phosphatase At2g17340 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340905, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340905
    Gene description
    damage-control phosphatase At2g17340
    Locus tag
    OSNPB_060325500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340905 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (12892539..12897413)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (12708072..12713063)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene probable inorganic phosphate transporter 1-9 Neighboring gene probable inorganic phosphate transporter 1-10 Neighboring gene uncharacterized LOC112939382 Neighboring gene uncharacterized LOC107281360

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pantothenate kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in coenzyme A biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    damage-control phosphatase At2g17340
    Names
    Os06g0325500
    P0421H01.40
    P0652D10.10
    pantothenate kinase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      12892539..12897413
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789046.3 → XP_015644532.1  damage-control phosphatase At2g17340 isoform X1

      UniProtKB/TrEMBL
      A2YCD2, Q0DCI5, Q5Z761, Q69T90
      Conserved Domains (1) summary
      PLN02902
      Location:9 → 362
      PLN02902; pantothenate kinase

    2. XM_066311594.1 → XP_066167691.1  damage-control phosphatase At2g17340 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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