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    LOC4336224 cyclin-dependent kinase G-2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336224, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4336224
    Gene description
    cyclin-dependent kinase G-2-like
    Locus tag
    OSNPB_040488000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CDKG-2; CDKG;2; OJ991113_30.14
    Expression
    Ubiquitous expression in roots after flowering (RPKM 40.8), leaves after flowering (RPKM 32.7) and 6 other tissues See more
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    Genomic context

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    See LOC4336224 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24371786..24378127)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerases II and IV subunit 5A Neighboring gene E3 ubiquitin-protein ligase RNF149-like Neighboring gene sister chromatid cohesion 1 protein 2 Neighboring gene pentatricopeptide repeat-containing protein At4g38010 Neighboring gene protein FLOWERING LOCUS T

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cyclin-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-dependent kinase G-2
    Names
    LOC_Os04g41100
    XP_015635720.1
    XP_015635721.1
    XP_015635722.1
    XP_015635724.1
    XP_025880973.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419595.1 → NP_001406524.1  cyclin-dependent kinase G-2

      Status: VALIDATED

      Source sequence(s)
      CB643213, CB668884, CB675523, CB675524, CF304546, CI577646
      UniProtKB/Swiss-Prot
      A2XUW1, B7F3Y9, Q7XUF4
      UniProtKB/TrEMBL
      A3AV27

    RNA

    1. NR_185087.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CB643213, CB668884, CB675523, CB675524, CF304546, CI025633, CI577646

    2. NR_185088.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK120634, CB643213, CB668884, CB675523, CB675524, CF304546, CI274070, CI577646

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24371786..24378127
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780238.2 → XP_015635724.1  cyclin-dependent kinase G-2 isoform X2

      UniProtKB/TrEMBL
      A3AV27
      Conserved Domains (2) summary
      cd07843
      Location:359 → 577
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1
      smart00220
      Location:365 → 574
      S_TKc; Serine/Threonine protein kinases, catalytic domain

    2. XM_015780235.2 → XP_015635721.1  cyclin-dependent kinase G-2 isoform X1

      UniProtKB/Swiss-Prot
      Q7XUF4
      Conserved Domains (1) summary
      cd07843
      Location:359 → 656
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

    3. XM_026025188.1 → XP_025880973.1  cyclin-dependent kinase G-2 isoform X1

      UniProtKB/Swiss-Prot
      A2XUW1, B7F3Y9, Q7XUF4
      UniProtKB/TrEMBL
      A3AV27
      Conserved Domains (1) summary
      cd07843
      Location:359 → 656
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

    4. XM_015780236.2 → XP_015635722.1  cyclin-dependent kinase G-2 isoform X1

      UniProtKB/Swiss-Prot
      A2XUW1, B7F3Y9, Q7XUF4
      UniProtKB/TrEMBL
      A3AV27
      Conserved Domains (1) summary
      cd07843
      Location:359 → 656
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

    5. XM_015780234.2 → XP_015635720.1  cyclin-dependent kinase G-2 isoform X1

      UniProtKB/Swiss-Prot
      A2XUW1, B7F3Y9, Q7XUF4
      UniProtKB/TrEMBL
      A3AV27
      Conserved Domains (1) summary
      cd07843
      Location:359 → 656
      STKc_CDC2L1; Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XUF4.2 GenPept UniProtKB/Swiss-Prot:Q7XUF4

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