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    LOC4351707 probable thiamine biosynthetic bifunctional enzyme, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351707, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4351707
    Gene description
    probable thiamine biosynthetic bifunctional enzyme, chloroplastic
    Locus tag
    OSNPB_120192500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_35490
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    Genomic context

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    See LOC4351707 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (4738538..4743020)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (4706835..4711283)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene syntaxin-111-like Neighboring gene uncharacterized LOC112937499 Neighboring gene putative protein Brevis radix-like 5 Neighboring gene protein FLX-like 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydroxymethylpyrimidine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphomethylpyrimidine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables thiamine-phosphate diphosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in thiamine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable thiamine biosynthetic bifunctional enzyme, chloroplastic
    Names
    LOC_Os12g09000
    NP_001391582.1
    NP_001391583.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404653.1 → NP_001391582.1  probable thiamine biosynthetic bifunctional enzyme, chloroplastic isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK066087, CB656742
      UniProtKB/Swiss-Prot
      A0A0P0Y7Y2, Q0IPK3, Q2QWK9

    2. NM_001404654.1 → NP_001391583.1  probable thiamine biosynthetic bifunctional enzyme, chloroplastic isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK100920, CI091085
      UniProtKB/TrEMBL
      B7ER32

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      4738538..4743020
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2QWK9.2 GenPept UniProtKB/Swiss-Prot:Q2QWK9

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials