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    LOC4324395 uncharacterized LOC4324395 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324395, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324395
    Gene description
    uncharacterized LOC4324395
    Locus tag
    OSNPB_010681600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 319.0), roots before flowering (RPKM 169.8) and 6 other tissues See more
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    Genomic context

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    See LOC4324395 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28668474..28671369)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (28080397..28083337)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene long chain acyl-CoA synthetase 4 Neighboring gene beclin-1-like protein Neighboring gene uncharacterized LOC4324396 Neighboring gene uncharacterized LOC4324397

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324395
    Names
    Os01g0681600
    P0019E03.25-1
    protein SDE2 homolog
    replication stress response regulator SDE2
    splicing factor-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      28668474..28671369
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765561.3 → XP_015621047.1  uncharacterized protein LOC4324395

      UniProtKB/TrEMBL
      A0A0P0V6L4, A2WTT8, A2ZWK6, Q8LHF3
      Conserved Domains (2) summary
      pfam13019
      Location:7 → 183
      Telomere_Sde2; Telomere stability and silencing
      pfam13297
      Location:379 → 438
      Telomere_Sde2_2; Telomere stability C-terminal
    Nucleotide Protein
    Heading Accession and Version

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