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    LOC4326509 uncharacterized LOC4326509 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326509, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326509
    Gene description
    uncharacterized LOC4326509
    Locus tag
    OSNPB_010939300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 2.3), milk grains (RPKM 2.3) and 4 other tissues See more
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    Genomic context

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    See LOC4326509 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (41881560..41886377, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (41230846..41236265, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354920 Neighboring gene calcium-transporting ATPase 1, plasma membrane-type-like Neighboring gene uncharacterized LOC4326508 Neighboring gene proline-rich receptor-like protein kinase PERK5 Neighboring gene eukaryotic peptide chain release factor subunit 1-3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4326509
    Names
    B1150F11.13
    Os01g0939300
    P0504E02.37
    Pax transcription activation domain interacting protein PTIP-like
    mediator of DNA damage checkpoint protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      41881560..41886377 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777708.3 → XP_015633194.1  uncharacterized protein LOC4326509

      UniProtKB/TrEMBL
      B8A975, B9EWD7, Q5JLP9, Q5JMJ1
      Conserved Domains (2) summary
      cd17744
      Location:471 → 545
      BRCT_MDC1_rpt1; first BRCT domain of mediator of DNA damage checkpoint protein 1 (MDC1) and similar proteins
      cd18432
      Location:577 → 662
      BRCT_PAXIP1_rpt6_like; sixth BRCT domain of PAX-interacting protein 1 (PAXIP1), second BRCT domain of mediator of DNA damage checkpoint protein 1 (MDC1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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