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    LOC4328603 lipoxygenase 2.3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328603, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328603
    Gene description
    lipoxygenase 2.3, chloroplastic
    Locus tag
    OSNPB_020194700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1225_F07.1
    Expression
    Biased expression in leaves before flowering (RPKM 130.6), roots after flowering (RPKM 46.6) and 1 other tissue See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5287383..5293529, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5276652..5282849, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene non-structural maintenance of chromosomes element 4 homolog A Neighboring gene leucine-rich repeat receptor protein kinase MSL1-like Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 8 Neighboring gene uncharacterized LOC4328604 Neighboring gene transcription factor TGAL9-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipoxygenase 2.3, chloroplastic
    Names
    Os02g0194700
    putative Lipoxygenase 2.3, chloroplast

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      5287383..5293529 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771289.3 → XP_015626775.1  lipoxygenase 2.3, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KEV1, B8AJB1, Q6H7Q6
      Conserved Domains (2) summary
      cd01751
      Location:92 → 214
      PLAT_LH2; PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense ...
      pfam00305
      Location:226 → 909
      Lipoxygenase
    Nucleotide Protein
    Heading Accession and Version

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