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    LOC4339633 mitogen-activated protein kinase 7-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339633, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4339633
    Gene description
    mitogen-activated protein kinase 7-like
    Locus tag
    OSNPB_050566400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MPK7; MAPK6; OsMAPK6; OJ1781_H11.5; OJ1781_H11.6
    Expression
    Biased expression in roots before flowering (RPKM 240.3), leaves before flowering (RPKM 52.5) and 3 other tissues See more
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    Genomic context

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    See LOC4339633 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (28188876..28194038, complement)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339631 Neighboring gene uncharacterized LOC4339632 Neighboring gene eukaryotic translation initiation factor 3 subunit D Neighboring gene uncharacterized LOC4339635

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A Group D MAPK Protects Plants from Autotoxicity by Suppressing Herbivore-Induced Defense Signaling. Li J, et al. Plant Physiol, 2019 Apr. PMID 30602493, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. controls excessive defense responses to planthoppers, and thereby prevents defense-response-related autotoxicity
      Title: A Group D MAPK Protects Plants from Autotoxicity by Suppressing Herbivore-Induced Defense Signaling.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables MAP kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitogen-activated protein kinase 7
    Names
    LOC_Os05g49140
    MAP kinase 6
    MAP kinase 7
    XP_015639430.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402634.1 → NP_001389563.1  mitogen-activated protein kinase 7

      Status: VALIDATED

      Source sequence(s)
      AK061645, AU055866, CI567497
      UniProtKB/TrEMBL
      A0A0P0WQC1, B3GCL3, Q0DFW7

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      28188876..28194038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783944.2 → XP_015639430.1  mitogen-activated protein kinase 7

      UniProtKB/TrEMBL
      Q0DFW7
      Conserved Domains (1) summary
      cd07859
      Location:35 → 372
      STKc_TDY_MAPK; Catalytic domain of the Serine/Threonine Kinases, Plant TDY Mitogen-Activated Protein Kinases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q67C40.1 GenPept UniProtKB/Swiss-Prot:Q67C40

    Gene LinkOut

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