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    LOC4342218 protein LONGIFOLIA 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342218, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342218
    Gene description
    protein LONGIFOLIA 1
    Locus tag
    OSNPB_070109400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1567_G09.117
    Expression
    Biased expression in flowers (RPKM 14.0), flower buds (RPKM 7.2) and 3 other tissues See more
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    Genomic context

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    See LOC4342218 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (526078..532152)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (515656..521953)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene flocculation protein FLO11 Neighboring gene uncharacterized LOC136357330 Neighboring gene small nucleolar RNA R12 Neighboring gene large ribosomal subunit protein uL13y Neighboring gene protein LEO1 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of monopolar cell growth IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein LONGIFOLIA 1
    Names
    Os07g0109400
    P0585H11.132

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      526078..532152
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791334.3 → XP_015646820.1  protein LONGIFOLIA 1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0X1Q1, A2YHF8, A3BFV6, Q7XIU5
      Conserved Domains (1) summary
      pfam14309
      Location:890 → 1066
      DUF4378; Domain of unknown function (DUF4378)

    2. XM_026027031.2 → XP_025882816.1  protein LONGIFOLIA 1 isoform X2

      Conserved Domains (1) summary
      pfam14309
      Location:884 → 1059
      DUF4378; Domain of unknown function (DUF4378)
    Nucleotide Protein
    Heading Accession and Version

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