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    LOC4327495 protein PIN-LIKES 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327495, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4327495
    Gene description
    protein PIN-LIKES 6
    Locus tag
    OSNPB_010818000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 28.3), flower buds (RPKM 25.6) and 6 other tissues See more
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    Genomic context

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    See LOC4327495 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (34834376..34839835)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Neighboring gene uncharacterized LOC4327494 Neighboring gene uncharacterized LOC107275876 Neighboring gene pentatricopeptide repeat-containing protein At3g14730 Neighboring gene KH domain-containing protein SPIN1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to cytosol auxin transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein PIN-LIKES 6
    Names
    Os01g0818000
    P0454H12.23
    auxin efflux carrier family protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      34834376..34839835
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765602.1 → XP_015621088.1  protein PIN-LIKES 6

      UniProtKB/TrEMBL
      A0A0P0V9N6, Q0JI87, Q5QMK5
      Conserved Domains (1) summary
      pfam03547
      Location:29 → 424
      Mem_trans; Membrane transport protein

    RNA

    1. XR_003239989.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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