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    LOC9269607 uncharacterized LOC9269607 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9269607, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9269607
    Gene description
    uncharacterized LOC9269607
    Locus tag
    OSNPB_020266500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 8.7), roots after flowering (RPKM 5.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (9550828..9559311)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (9523606..9532133)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g16010 Neighboring gene uncharacterized LOC4328960 Neighboring gene bZIP transcription factor RISBZ3-like Neighboring gene uncharacterized LOC107278773

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ligase activity, forming carbon-nitrogen bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC9269607
    Names
    Os02g0266500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      9550828..9559311
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770036.3 → XP_015625522.1  uncharacterized protein LOC9269607 isoform X1

      UniProtKB/TrEMBL
      B9F4X2
      Conserved Domains (1) summary
      cd01992
      Location:70 → 284
      PP-ATPase; N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases ...

    2. XM_015770037.3 → XP_015625523.1  uncharacterized protein LOC9269607 isoform X1

      UniProtKB/TrEMBL
      B9F4X2
      Conserved Domains (1) summary
      cd01992
      Location:70 → 284
      PP-ATPase; N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases ...

    3. XM_015770038.3 → XP_015625524.1  uncharacterized protein LOC9269607 isoform X2

      UniProtKB/TrEMBL
      B9F4X2
      Conserved Domains (2) summary
      COG0037
      Location:66 → 290
      TilS; tRNA(Ile)-lysidine synthase TilS/MesJ [Translation, ribosomal structure and biogenesis]
      cd01992
      Location:70 → 284
      PP-ATPase; N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases ...
    Nucleotide Protein
    Heading Accession and Version

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