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    LOC4344268 pectinesterase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344268, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4344268
    Gene description
    pectinesterase
    Locus tag
    OSNPB_070675100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 4.6), flower buds (RPKM 3.6) and 1 other tissue See more
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    Genomic context

    See LOC4344268 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28792749..28796618, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28559089..28563136, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like Neighboring gene probable acyl-CoA dehydrogenase IBR3 Neighboring gene uncharacterized LOC9270854 Neighboring gene uncharacterized LOC136357148

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    pectinesterase
    Names
    Os07g0675100
    P0037D09.23
    P0618H09.21
    putative pectinesterase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      28792749..28796618 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791611.3XP_015647097.1  pectinesterase

      UniProtKB/TrEMBL
      B8B5V1, Q0D3N9, Q69J83, Q6ZDX2
      Conserved Domains (1) summary
      PLN02301
      Location:131578
      PLN02301; pectinesterase/pectinesterase inhibitor