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    LOC4332412 protein spotted leaf 11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332412, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4332412
    Gene description
    protein spotted leaf 11
    Locus tag
    OSNPB_030275900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 25.8), flowers (RPKM 10.1) and 6 other tissues See more
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    Genomic context

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    See LOC4332412 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (9379859..9385319)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9329367..9334874)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4332408 Neighboring gene putative clathrin assembly protein At2g25430 Neighboring gene dof zinc finger protein DOF5.1 Neighboring gene heat shock cognate 70 kDa protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein spotted leaf 11
    Names
    Os03g0275900
    putative spotted leaf 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      9379859..9385319
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777309.3 → XP_015632795.1  protein spotted leaf 11

      UniProtKB/TrEMBL
      A0A8J8XL77, B8AL18, B9F7B2, Q0DT13, Q10NB2
      Conserved Domains (4) summary
      smart00504
      Location:297 → 360
      Ubox; Modified RING finger domain
      PLN03200
      Location:381 → 667
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:432 → 457
      ARM; armadillo repeat [structural motif]
      cd21037
      Location:54 → 184
      MLKL_NTD; N-terminal domain of mixed lineage kinase domain-like protein (MLKL) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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