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    LOC4328954 vacuolar protein sorting-associated protein 29 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328954, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328954
    Gene description
    vacuolar protein sorting-associated protein 29
    Locus tag
    OSNPB_020265400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4328954 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (9485498..9491013, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (9458287..9463824, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene arabinogalactan protein 20 Neighboring gene probable WRKY transcription factor 27 Neighboring gene early light-induced protein 1, chloroplastic Neighboring gene uncharacterized LOC4328955

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of retromer complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 29
    Names
    Os02g0265400
    P0006C08.21
    putative vacuolar protein sorting; Vps29p

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      9485498..9491013 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771841.3 → XP_015627327.1  vacuolar protein sorting-associated protein 29

      UniProtKB/TrEMBL
      A0A0N7KF22, A2X377, Q0E275, Q6ETY0
      Conserved Domains (1) summary
      cd07394
      Location:3 → 180
      MPP_Vps29; Homo sapiens Vps29 and related proteins, metallophosphatase domain
    Nucleotide Protein
    Heading Accession and Version

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