U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4347359 transcription factor BIM2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347359, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4347359
    Gene description
    transcription factor BIM2
    Locus tag
    OSNPB_090475400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4347359 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (22591156..22598421)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (18207605..18214973)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-kinase gamma 5 Neighboring gene uncharacterized LOC136351721 Neighboring gene rhamnogalacturonan I rhamnosyltransferase 1 Neighboring gene uncharacterized LOC4347361

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription factor BIM2; transcription factor BIM3
    Names
    OSJNBa0026C08.39-1
    Os09g0475400
    P0556A05.2-1
    bHLH protein family-like
    bHLH transcription factor

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      22591156..22598421
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757038.3 → XP_015612524.1  transcription factor BIM3 isoform X1

      UniProtKB/TrEMBL
      B8BCR2, Q0J0Z2, Q651Z4, Q69JI7
      Conserved Domains (1) summary
      cd11453
      Location:216 → 291
      bHLH_AtBIM_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BES1-interacting Myc-like proteins (BIMs) and similar proteins

    2. XM_015757039.3 → XP_015612525.1  transcription factor BIM2 isoform X2

      UniProtKB/TrEMBL
      B8BCR2
      Conserved Domains (1) summary
      pfam00010
      Location:135 → 184
      HLH; Helix-loop-helix DNA-binding domain

    RNA

    1. XR_010735022.1 RNA Sequence

    2. XR_010735023.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials