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    LOC4338413 transcription factor WRKY45-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338413, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338413
    Gene description
    transcription factor WRKY45-1-like
    Locus tag
    OSNPB_050322900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    WRKY45; WRKY45-1
    Expression
    Biased expression in roots before flowering (RPKM 172.3), leaves after flowering (RPKM 168.5) and 2 other tissues See more
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    Genomic context

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    See LOC4338413 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (15071731..15073878)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (14991562..14993726)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene trans-cinnamate 4-monooxygenase-like Neighboring gene WRKY transcription factor 55 Neighboring gene rhodanese-like domain-containing protein 7 Neighboring gene uncharacterized LOC9266328

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Structural basis of dimerization and dual W-box DNA recognition by rice WRKY domain. Cheng X, et al. Nucleic Acids Res, 2019 May 7. PMID 30783673, Free PMC Article
    2. WRKY45 phosphorylation at threonine 266 acts negatively on WRKY45-dependent blast resistance in rice. Ueno Y, et al. Plant Signal Behav, 2017 Aug 3. PMID 28758876, Free PMC Article
    3. Transposon-derived small RNA is responsible for modified function of WRKY45 locus. Zhang H, et al. Nat Plants, 2016 Feb 29. PMID 27249351
    4. The WRKY45-Dependent Signaling Pathway Is Required For Resistance against Striga hermonthica Parasitism. Mutuku JM, et al. Plant Physiol, 2015 Jul. PMID 26025049, Free PMC Article
    5. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Structural basis of dimerization and dual W-box DNA recognition by rice WRKY45 have been reported.
      Title: Structural basis of dimerization and dual W-box DNA recognition by rice WRKY domain.
    2. Thr266 phosphorylation acts negatively on WRKY45-dependent disease resistance.
      Title: WRKY45 phosphorylation at threonine 266 acts negatively on WRKY45-dependent blast resistance in rice.
    3. Expression of WRKY45-1, but not WRKY45-2, generated TE-siR815, which in turn repressed ST1, an important component in WRKY45-mediated resistance, by RNA-directed DNA methylation.
      Title: Transposon-derived small RNA is responsible for modified function of WRKY45 locus.
    4. These results point to a model in which WRKY45 modulates a cross talk in resistance against S. hermonthica by positively regulating both salicylic acid/benzothiadiazole and jasmonic acid pathways.
      Title: The WRKY45-Dependent Signaling Pathway Is Required For Resistance against Striga hermonthica Parasitism.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor WRKY45-1-like
    Names
    Os05g0322900
    WRKY-type transcription factor 45-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      15071731..15073878
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782108.3 → XP_015637594.1  transcription factor WRKY45-1-like

      UniProtKB/Swiss-Prot
      A0A0P0WKZ2, Q5W6D6
      Conserved Domains (1) summary
      smart00774
      Location:117 → 177
      WRKY; DNA binding domain
    Nucleotide Protein
    Heading Accession and Version

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