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    LOC4328041 large ribosomal subunit protein mL102 (rPPR5) [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328041, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328041
    Gene description
    large ribosomal subunit protein mL102 (rPPR5)
    Locus tag
    OSNPB_020110400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (568325..570975, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (561732..564482, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable inactive linolenate hydroperoxide lyase Neighboring gene mediator of RNA polymerase II transcription subunit 2 Neighboring gene uncharacterized LOC4328042 Neighboring gene receptor-like serine/threonine-protein kinase NCRK

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein mL102 (rPPR5)
    Names
    Os02g0110400
    P0501G04.11
    pentatricopeptide repeat-containing protein At2g37230
    putative pentatricopeptide (PPR) repeat-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      568325..570975 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770929.3 → XP_015626415.1  large ribosomal subunit protein mL102 (rPPR5)

      UniProtKB/TrEMBL
      A0A0N7KEJ7, B8AGJ7, B9F1S2, Q6Z8Z5
      Conserved Domains (2) summary
      PLN03081
      Location:198 → 630
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:244 → 271
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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