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    LOC4344335 probable E3 ubiquitin-protein ligase ATL45 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344335, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4344335
    Gene description
    probable E3 ubiquitin-protein ligase ATL45
    Locus tag
    OSNPB_070686300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1150_E04.109; OJ1200_C08.113
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    Genomic context

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    See LOC4344335 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29152151..29153537, complement)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT1.7 Neighboring gene ABSCISIC ACID-INSENSITIVE 5-like protein 5 Neighboring gene cingulin Neighboring gene nitrate regulatory gene2 protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase ATL45
    Names
    Os07g0686300
    RING-H2 finger protein ATL45

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      29152151..29153537 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790304.2 → XP_015645790.1  probable E3 ubiquitin-protein ligase ATL45

      UniProtKB/TrEMBL
      A2YQ28, Q0D3H7, Q8LIH1
      Conserved Domains (1) summary
      cl17238
      Location:96 → 141
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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