U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4346505 CASP-like protein 5B3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346505, updated on 16-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4346505
    Gene description
    CASP-like protein 5B3
    Locus tag
    OSNPB_090249400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_28518; OsCASPL5B3; OJ1695_A02.21
    Expression
    Broad expression in flower buds (RPKM 6.2), milk grains (RPKM 6.0) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4346505 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (8092105..8095862)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (3745660..3749524)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate-dependent dioxygenase 33-like Neighboring gene thiohydroximate-O-sulfate sulfur/sulfate-lyase (nitrile-forming) NSP5 Neighboring gene protein RDM16 Neighboring gene serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cASP-like protein 5B3
    Names
    LOC_Os09g07480
    integral membrane protein-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422706.1 → NP_001409635.1  cASP-like protein 5B3

      Status: VALIDATED

      Source sequence(s)
      AK063577, CI440961, CI504929
      UniProtKB/Swiss-Prot
      A0A0P0XK66, B8BD96, Q6K478

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      8092105..8095862
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6K478.1 GenPept UniProtKB/Swiss-Prot:Q6K478

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials