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    LOC4331932 low affinity sulfate transporter 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331932, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4331932
    Gene description
    low affinity sulfate transporter 3
    Locus tag
    OSNPB_030195300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 5.0), flowers (RPKM 4.1) and 6 other tissues See more
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    Genomic context

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    See LOC4331932 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4946376..4954035, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene cytochrome b561 and DOMON domain-containing protein At3g25290 Neighboring gene aminotransferase ALD1 homolog Neighboring gene ribosome biogenesis protein TSR3 homolog Neighboring gene low affinity sulfate transporter 3 Neighboring gene uncharacterized LOC4331936 Neighboring gene sulfate transporter 1.2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables secondary active sulfate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sulfate transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    low affinity sulfate transporter 3
    Names
    Os03g0195300
    Os03g0195400
    putative sulfate transporter 2.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      4946376..4954035 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775292.2 → XP_015630778.1  low affinity sulfate transporter 3 isoform X1

      UniProtKB/TrEMBL
      B9F5P4, Q0DUB7, Q10QI4
      Conserved Domains (1) summary
      TIGR00815
      Location:83 → 640
      sulP; high affinity sulphate transporter 1

    2. XM_015775294.1 → XP_015630780.1  low affinity sulfate transporter 3 isoform X1

      UniProtKB/TrEMBL
      B9F5P4, Q0DUB7, Q10QI4
      Conserved Domains (1) summary
      TIGR00815
      Location:83 → 640
      sulP; high affinity sulphate transporter 1

    3. XM_015775295.2 → XP_015630781.1  low affinity sulfate transporter 3 isoform X2

      UniProtKB/TrEMBL
      B9F5P4
      Conserved Domains (2) summary
      TIGR00815
      Location:93 → 603
      sulP; high affinity sulphate transporter 1
      pfam01740
      Location:492 → 603
      STAS; STAS domain

    4. XM_015775296.2 → XP_015630782.1  low affinity sulfate transporter 3 isoform X3

      UniProtKB/TrEMBL
      B9F5P4
      Conserved Domains (2) summary
      TIGR00815
      Location:69 → 579
      sulP; high affinity sulphate transporter 1
      pfam01740
      Location:468 → 579
      STAS; STAS domain
    Nucleotide Protein
    Heading Accession and Version

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