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    LOC4336869 uncharacterized LOC4336869 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336869, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336869
    Gene description
    uncharacterized LOC4336869
    Locus tag
    OSNPB_040599700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 16.3), flowers (RPKM 12.7) and 6 other tissues See more
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    Genomic context

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    See LOC4336869 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30770432..30773626)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30264180..30267399)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene altered inheritance rate of mitochondria protein 25 Neighboring gene uncharacterized LOC9266263 Neighboring gene cell division cycle 20.2, cofactor of APC complex Neighboring gene clathrin interactor EPSIN 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4336869
    Names
    Os04g0599700
    P-loop guanosine triphosphatase YjiA

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      30770432..30773626
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779918.3 → XP_015635404.1  uncharacterized protein LOC4336869

      UniProtKB/TrEMBL
      A0A0P0WEB3, B8ATL9, B9FCA4, Q7XPT4
      Conserved Domains (1) summary
      COG0523
      Location:71 → 411
      YejR; GTPase, G3E family [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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