LOC4327594 uncharacterized LOC4327594 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4327594
Gene description: uncharacterized LOC4327594
Locus tag: OSNPB_010813900
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: ziga1
Expression: Ubiquitous expression in leaves before flowering (RPKM 19.2), roots before flowering (RPKM 18.9) and 6 other tissues See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 1

Exon count:: 19

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	1	NC_029256.1 (34612592..34623909)

Chromosome 1 - NC_029256.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables GTPase activator activity	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: uncharacterized LOC4327594; uncharacterized protein LOC4327594

Names: OSJNBa0085D07.17; OSJNBa0085D07.19; Os01g0813900; Os01g0814000; P0432B10.20; P0432B10.22; ZIGA1 protein-like; putative ARF GAP-like zinc finger-containing protein ZiGA4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001409140.1 → NP_001396069.1 uncharacterized LOC4327594

Status: VALIDATED

Source sequence(s)

AK101729, AP014957, CI587900, CI600016

UniProtKB/TrEMBL

A2WWA8, A2ZYX5, Q5N770

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029256.1 Reference IRGSP-1.0 Primary Assembly

Range

34612592..34623909

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015784111.2 → XP_015639597.1 uncharacterized protein LOC4327594

Conserved Domains (3) summary

PLN03131
Location:1 → 788

PLN03131; hypothetical protein; Provisional

pfam01412
Location:11 → 122

ArfGap; Putative GTPase activating protein for Arf

pfam10453
Location:1096 → 1141

NUFIP1; Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)