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    LOC4344416 high mobility group B protein 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344416, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344416
    Gene description
    high mobility group B protein 7
    Locus tag
    OSNPB_080101100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 9.8), flowers (RPKM 4.3) and 2 other tissues See more
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    Genomic context

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    See LOC4344416 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (76008..77273, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (71345..72738, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344413 Neighboring gene B3 domain-containing protein IDEF1-like Neighboring gene uncharacterized LOC9270388 Neighboring gene molybdate transporter 1 Neighboring gene flap endonuclease GEN-like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    high mobility group B protein 7
    Names
    B1147B12.13
    HMG type nucleosome/chromatin assembly factor
    Os08g0101100
    putative HMG type nucleosome/chromatin assembly factor D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      76008..77273 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793520.3 → XP_015649006.1  high mobility group B protein 7

      UniProtKB/TrEMBL
      A0A0P0XB12, A2YQB2, A3BNS5, Q6Z1Z2
      Conserved Domains (1) summary
      cd01390
      Location:93 → 154
      HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    Nucleotide Protein
    Heading Accession and Version

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