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    LOC4329853 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329853, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4329853
    Gene description
    beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase
    Locus tag
    OSNPB_020594900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1126_D09.18
    Expression
    Broad expression in roots before flowering (RPKM 118.2), roots after flowering (RPKM 42.7) and 5 other tissues See more
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    Genomic context

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    See LOC4329853 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23069732..23072541, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein At1g67900 Neighboring gene NAC domain-containing protein 73 Neighboring gene beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase Neighboring gene uncharacterized LOC4329855 Neighboring gene uncharacterized LOC4329856

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in N-acetylglucosamine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein N-linked glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase
    Names
    Os02g0594900
    glycosyl transferase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      23069732..23072541 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767193.2 → XP_015622679.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase isoform X2

      UniProtKB/TrEMBL
      A2X6Q3, Q0DZW5, Q6ZI62
      Conserved Domains (1) summary
      pfam04724
      Location:42 → 389
      Glyco_transf_17; Glycosyltransferase family 17

    2. XM_026022643.1 → XP_025878428.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase isoform X1

      UniProtKB/TrEMBL
      A2X6Q3
      Conserved Domains (1) summary
      pfam04724
      Location:65 → 412
      Glyco_transf_17; Glycosyltransferase family 17

    3. XM_015767195.2 → XP_015622681.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase isoform X3

      UniProtKB/TrEMBL
      A3A8L8
      Conserved Domains (1) summary
      pfam04724
      Location:31 → 378
      Glyco_transf_17; Glycosyltransferase family 17
    Nucleotide Protein
    Heading Accession and Version

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