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    LOC9267835 DNA-directed RNA polymerase II subunit 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9267835, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9267835
    Gene description
    DNA-directed RNA polymerase II subunit 1
    Locus tag
    OSNPB_080155700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1177_E11.16
    Expression
    Ubiquitous expression in roots after flowering (RPKM 40.3), flower buds (RPKM 29.8) and 6 other tissues See more
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    Genomic context

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    See LOC9267835 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (3224272..3234028, complement)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene vesicle-associated protein 1-3 Neighboring gene protein NRT1/ PTR FAMILY 6.3 Neighboring gene uncharacterized LOC9266120 Neighboring gene uncharacterized LOC4344693

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II, core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase II subunit 1
    Names
    DNA-directed RNA polymerase largest chain-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      3224272..3234028 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794333.2 → XP_015649819.1  DNA-directed RNA polymerase II subunit 1

      UniProtKB/TrEMBL
      A0A0P0WI29
      Conserved Domains (6) summary
      cd02584
      Location:1054 → 1466
      RNAP_II_Rpb1_C; Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain
      PRK08566
      Location:18 → 892
      PRK08566; DNA-directed RNA polymerase subunit A'; Validated
      cd02733
      Location:18 → 871
      RNAP_II_RPB1_N; Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain
      pfam04992
      Location:891 → 1075
      RNA_pol_Rpb1_6; RNA polymerase Rpb1, domain 6
      pfam04998
      Location:825 → 1418
      RNA_pol_Rpb1_5; RNA polymerase Rpb1, domain 5
      cl23807
      Location:1717 → 1782
      WWbp; WW-domain ligand protein
    Nucleotide Protein
    Heading Accession and Version

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