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    LOC4347363 uncharacterized LOC4347363 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347363, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347363
    Gene description
    uncharacterized LOC4347363
    Locus tag
    OSNPB_090476100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 20.4), leaves after flowering (RPKM 18.5) and 6 other tissues See more
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    Genomic context

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    See LOC4347363 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (22624272..22628856, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (18240740..18245390, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene dof zinc finger protein MNB1A Neighboring gene protein MICROTUBULE BINDING PROTEIN 2C Neighboring gene uncharacterized LOC9267800 Neighboring gene fasciclin-like arabinogalactan protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA alternative polyadenylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mRNA cleavage and polyadenylation specificity factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4347363
    Names
    Os09g0476100
    P0556A05.12
    RNA-binding protein-like
    death-inducer obliterator 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      22624272..22628856 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756814.3 → XP_015612300.1  uncharacterized protein LOC4347363

      UniProtKB/TrEMBL
      A0A0P0XP91, A2Z2C1, A3BZW9, Q651Z0
      Conserved Domains (1) summary
      cd12372
      Location:187 → 260
      RRM_CFIm68_CFIm59; RNA recognition motif (RRM) found in pre-mRNA cleavage factor Im 68 kDa subunit (CFIm68 or CPSF6), pre-mRNA cleavage factor Im 59 kDa subunit (CFIm59 or CPSF7), and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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