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    LOC4329765 7-deoxyloganetin glucosyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329765, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4329765
    Gene description
    7-deoxyloganetin glucosyltransferase
    Locus tag
    OSNPB_020578300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1267B06.2
    Expression
    Broad expression in roots before flowering (RPKM 6.9), leaves after flowering (RPKM 1.4) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (22710997..22712845)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (22229411..22231652)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene 7-deoxyloganetin glucosyltransferase-like Neighboring gene 7-deoxyloganetin glucosyltransferase Neighboring gene casparian strip membrane protein 5 Neighboring gene photosynthetic NDH subunit of lumenal location 2, chloroplastic Neighboring gene 2-hydroxy-palmitic acid dioxygenase MPO1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables quercetin 3-O-glucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables quercetin 7-O-glucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    7-deoxyloganetin glucosyltransferase
    Names
    B1342F01.33
    Os02g0578300
    putative UDP-glycosyltransferase 85A8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428265.1 → NP_001415194.1  7-deoxyloganetin glucosyltransferase

      Status: VALIDATED

      Source sequence(s)
      AK105275
      UniProtKB/TrEMBL
      B9F0Q5, Q69JU6, Q6EP59

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      22710997..22712845
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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