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    LOC4345308 protein ENHANCED DOWNY MILDEW 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345308, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345308
    Gene description
    protein ENHANCED DOWNY MILDEW 2
    Locus tag
    OSNPB_080337001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 5.9), flowers (RPKM 5.5) and 6 other tissues See more
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    Genomic context

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    See LOC4345308 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (15170014..15185789)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (15093604..15109402)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene protein ENHANCED DOWNY MILDEW 2 Neighboring gene uncharacterized LOC136351321 Neighboring gene protein ENHANCED DOWNY MILDEW 2 Neighboring gene uncharacterized LOC112936160

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein ENHANCED DOWNY MILDEW 2
    Names
    Os08g0337001
    Os08g0337100
    P0683E12.20
    P0689D06.24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      15170014..15185789
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795624.3 → XP_015651110.1  protein ENHANCED DOWNY MILDEW 2

      UniProtKB/TrEMBL
      B9G0E6
      Conserved Domains (3) summary
      cd15566
      Location:372 → 434
      PHD3_NSD; PHD finger 3 found in nuclear receptor-binding SET domain-containing (NSD) proteins
      pfam12047
      Location:9 → 137
      DNMT1-RFD; Cytosine specific DNA methyltransferase replication foci domain
      cl22851
      Location:306 → 370
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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