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    LOC4347436 transcription factor TGA2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347436, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347436
    Gene description
    transcription factor TGA2
    Locus tag
    OSNPB_090489500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in mature seeds (RPKM 11.5), milk grains (RPKM 9.0) and 2 other tissues See more
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    Genomic context

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    See LOC4347436 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (23270246..23278943, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (18868492..18877663, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4347433 Neighboring gene IRK-interacting protein Neighboring gene lysine-specific demethylase JMJ30 Neighboring gene uncharacterized LOC136351819 Neighboring gene uncharacterized LOC136351821 Neighboring gene ETHYLENE INSENSITIVE 3-like 3 protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1. Moon SJ, et al. PLoS One, 2018. PMID 30444888, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor TGA2
    Names
    Os09g0489500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      23270246..23278943 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757080.3 → XP_015612566.1  transcription factor TGA2 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XPK1, Q0J0P4
      Conserved Domains (2) summary
      pfam14144
      Location:305 → 380
      DOG1; Seed dormancy control
      cl21462
      Location:202 → 251
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    2. XM_015757079.3 → XP_015612565.1  transcription factor TGA2 isoform X1

      UniProtKB/TrEMBL
      A0A8J8XYK2, B7EU89, B9G4A4
      Conserved Domains (2) summary
      pfam14144
      Location:307 → 382
      DOG1; Seed dormancy control
      cl21462
      Location:204 → 253
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version

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