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    LOC4346800 probable LRR receptor-like serine/threonine-protein kinase At1g07650 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346800, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346800
    Gene description
    probable LRR receptor-like serine/threonine-protein kinase At1g07650
    Locus tag
    OSNPB_090345300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 13.1), leaves after flowering (RPKM 13.1) and 4 other tissues See more
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    Genomic context

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    See LOC4346800 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (15123706..15132482)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (10785098..10793903)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene sulfite exporter TauE/SafE family protein 3 Neighboring gene E3 ubiquitin-protein ligase SIRP1-like Neighboring gene uncharacterized LOC4346799 Neighboring gene uncharacterized LOC107276061 Neighboring gene small heat shock protein, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable LRR receptor-like serine/threonine-protein kinase At1g07650
    Names
    OSJNBb0085I16.18
    Os09g0345300
    leucine-rich repeat family protein /protein kinase family protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      15123706..15132482
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026020486.1 → XP_025876271.1  probable LRR receptor-like serine/threonine-protein kinase At1g07650 isoform X4

      UniProtKB/TrEMBL
      B8BEP4
      Conserved Domains (4) summary
      sd00033
      Location:142 → 165
      LRR_RI; leucine-rich repeat [structural motif]
      pfam11721
      Location:416 → 601
      Malectin; Di-glucose binding within endoplasmic reticulum
      cl21453
      Location:691 → 850
      PKc_like; Protein Kinases, catalytic domain
      cl26793
      Location:62 → 819
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional

    2. XM_015795875.3 → XP_015651361.1  probable LRR receptor-like serine/threonine-protein kinase At1g07650 isoform X3

      UniProtKB/TrEMBL
      B8BEP4
      Conserved Domains (4) summary
      smart00219
      Location:690 → 955
      TyrKc; Tyrosine kinase, catalytic domain
      cd14066
      Location:691 → 957
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:142 → 165
      LRR_RI; leucine-rich repeat [structural motif]
      pfam11721
      Location:416 → 601
      Malectin; Di-glucose binding within endoplasmic reticulum

    3. XM_015795872.3 → XP_015651358.1  probable LRR receptor-like serine/threonine-protein kinase At1g07650 isoform X1

      UniProtKB/TrEMBL
      B8BEP4
      Conserved Domains (4) summary
      smart00219
      Location:690 → 957
      TyrKc; Tyrosine kinase, catalytic domain
      cd14066
      Location:691 → 959
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:142 → 165
      LRR_RI; leucine-rich repeat [structural motif]
      pfam11721
      Location:416 → 601
      Malectin; Di-glucose binding within endoplasmic reticulum

    4. XM_015795874.3 → XP_015651360.1  probable LRR receptor-like serine/threonine-protein kinase At1g07650 isoform X2

      UniProtKB/TrEMBL
      B8BEP4
      Conserved Domains (4) summary
      smart00219
      Location:689 → 956
      TyrKc; Tyrosine kinase, catalytic domain
      cd14066
      Location:690 → 958
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:95 → 118
      LRR_RI; leucine-rich repeat [structural motif]
      pfam11721
      Location:415 → 600
      Malectin; Di-glucose binding within endoplasmic reticulum
    Nucleotide Protein
    Heading Accession and Version

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