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    LOC4324040 uncharacterized LOC4324040 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324040, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4324040
    Gene description
    uncharacterized LOC4324040
    Locus tag
    OSNPB_010506200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 8.2), roots after flowering (RPKM 6.5) and 6 other tissues See more
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    Genomic context

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    See LOC4324040 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (18178126..18192801, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (17612306..17627033, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281700 Neighboring gene pentatricopeptide repeat-containing protein At5g11310, mitochondrial Neighboring gene uncharacterized LOC136355339 Neighboring gene uncharacterized LOC112939232

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324040
    Names
    Os01g0506200
    P0436D06.46
    tetratricopeptide repeat domain 5-like protein
    tetratricopeptide repeat protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      18178126..18192801 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765643.3 → XP_015621129.1  uncharacterized protein LOC4324040

      UniProtKB/TrEMBL
      A0A0P0V343, A0A5S6R7D3, A0A9K3Y722, B8A8Y6, B9EX49, Q0JMG5, Q5QN89
      Conserved Domains (2) summary
      sd00006
      Location:114 → 142
      TPR; TPR repeat [structural motif]
      pfam16669
      Location:311 → 422
      TTC5_OB; Tetratricopeptide repeat protein 5 OB fold domain
    Nucleotide Protein
    Heading Accession and Version

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