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    LOC4349443 haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349443, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4349443
    Gene description
    haloacid dehalogenase-like hydrolase domain-containing protein Sgpp
    Locus tag
    OSNPB_100568900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 21.9), roots after flowering (RPKM 18.7) and 6 other tissues See more
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    Genomic context

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    See LOC4349443 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22555779..22557917)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene zinc finger MYM-type protein 1 Neighboring gene uncharacterized LOC4349441 Neighboring gene disease resistance protein PIK6-NP Neighboring gene uncharacterized LOC4349444 Neighboring gene phosphatidylinositol N-acetylglucosaminyltransferase subunit P

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    haloacid dehalogenase-like hydrolase domain-containing protein Sgpp
    Names
    Os10g0568900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      22555779..22557917
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757458.2 → XP_015612944.1  haloacid dehalogenase-like hydrolase domain-containing protein Sgpp isoform X2

      UniProtKB/TrEMBL
      B9G741, Q336Q4
      Conserved Domains (1) summary
      cl21460
      Location:44 → 285
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    2. XM_015757457.2 → XP_015612943.1  haloacid dehalogenase-like hydrolase domain-containing protein Sgpp isoform X1

      UniProtKB/TrEMBL
      Q8S7Q2
      Conserved Domains (2) summary
      COG0637
      Location:59 → 278
      YcjU; Beta-phosphoglucomutase or related phosphatase, HAD superfamily [Carbohydrate transport and metabolism, General function prediction only]
      cl21460
      Location:56 → 286
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    3. XM_015757459.2 → XP_015612945.1  haloacid dehalogenase-like hydrolase domain-containing protein Sgpp isoform X3

      UniProtKB/TrEMBL
      B9G741
      Conserved Domains (1) summary
      cl21460
      Location:44 → 284
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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