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    LOC4350407 magnesium-dependent phosphatase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350407, updated on 21-Dec-2023

    Summary

    Gene symbol
    LOC4350407
    Gene description
    magnesium-dependent phosphatase 1
    Locus tag
    OSNPB_110434000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 7.9), leaves before flowering (RPKM 6.6) and 6 other tissues See more
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    Genomic context

    See LOC4350407 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (14048527..14052515, complement)

    Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4350405 Neighboring gene 60S ribosomal protein L38 Neighboring gene ankyrin repeat-containing protein At5g02620 Neighboring gene receptor-interacting serine/threonine-protein kinase 4-like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    magnesium-dependent phosphatase 1
    Names
    Os11g0434000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

      Range
      14048527..14052515 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762234.2XP_015617720.1  magnesium-dependent phosphatase 1

      UniProtKB/TrEMBL
      Q0IT00, Q2R5L0
      Conserved Domains (1) summary
      cd07501
      Location:53177
      HAD_MDP-1_like; eukaryotic hypothetical phosphotyrosine phosphatase MDP-1 and related phosphatases, similar to Bacillus cereus phosphonoacetaldehyde hydrolase and Streptomyces FkbH