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    LOC4342212 protein C2-DOMAIN ABA-RELATED 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342212, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4342212
    Gene description
    protein C2-DOMAIN ABA-RELATED 4
    Locus tag
    OSNPB_070108500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1567_G09.105
    Expression
    Biased expression in flower buds (RPKM 30.4) and flowers (RPKM 25.8) See more
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    Genomic context

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    See LOC4342212 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (457638..460250, complement)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene GTPase activating protein 1-like Neighboring gene xylanase inhibitor protein 2-like Neighboring gene ervatamin-B Neighboring gene two pore potassium channel b-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein C2-DOMAIN ABA-RELATED 4
    Names
    Os07g0108500
    P0585H11.120
    zinc finger and C2 domain protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      457638..460250 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790900.2 → XP_015646386.1  protein C2-DOMAIN ABA-RELATED 4

      UniProtKB/TrEMBL
      A0A0P0X1T4, Q69UT8, Q7XIU9
      Conserved Domains (1) summary
      cd04038
      Location:5 → 148
      C2_ArfGAP; C2 domain present in Arf GTPase Activating Proteins (GAP)
    Nucleotide Protein
    Heading Accession and Version

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