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    LOC4333748 gamma-glutamyl peptidase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333748, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4333748
    Gene description
    gamma-glutamyl peptidase 3
    Locus tag
    OSNPB_030685300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 24.4), milk grains (RPKM 14.9) and 4 other tissues See more
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    Genomic context

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    See LOC4333748 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (27334177..27337906)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene ferredoxin C 2, chloroplastic Neighboring gene uncharacterized tRNA/rRNA methyltransferase YsgA Neighboring gene uncharacterized protein C6C3.02c Neighboring gene small nucleolar RNA snoR138 Neighboring gene small nucleolar RNA U19

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gamma-glutamyl peptidase 3
    Names
    Os03g0685300
    putative glutamine amidotransferase-like protein C13C5.04

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      27334177..27337906
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773037.2 → XP_015628523.1  gamma-glutamyl peptidase 3

      UniProtKB/TrEMBL
      A0A5S6RDU4, A2XKS3, Q0DPJ9, Q10F14, Q9AUL0
      Conserved Domains (1) summary
      cd01741
      Location:36 → 218
      GATase1_1; Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain
    Nucleotide Protein
    Heading Accession and Version

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