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    AL1 Albino Leaf1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333151, updated on 10-Oct-2024

    Summary

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    Gene symbol
    AL1
    Gene description
    Albino Leaf1
    Locus tag
    OSNPB_030425000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_11335
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    Genomic context

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    See AL1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (18194192..18197714)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (17738071..17741588)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene transcription factor MYB44-like Neighboring gene small ribosomal subunit protein eS19-like Neighboring gene uncharacterized LOC4333152 Neighboring gene probable uridine nucleosidase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Albino Leaf1 That Encodes the Sole Octotricopeptide Repeat Protein Is Responsible for Chloroplast Development. Zhang Z, et al. Plant Physiol, 2016 Jun. PMID 27208287, Free PMC Article
    2. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chloroplast rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondrial RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mitochondrial mRNA stability IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrial matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribonucleoprotein granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rAP domain-containing protein, chloroplastic
    Names
    LOC_Os03g31150
    Os03g0425000
    Protein ALBINO LEAF 1
    RAP domain-containing protein, chloroplastic
    RAP domain-containing protein, chloroplastic-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417734.1 → NP_001404663.1  rAP domain-containing protein, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK064858, CI293527
      UniProtKB/Swiss-Prot
      Q0DR24, Q84MH1

    RNA

    1. NR_184572.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK064858, AU100705, CI293527

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      18194192..18197714
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_003241231.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84MH1.1 GenPept UniProtKB/Swiss-Prot:Q84MH1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials