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    LOC4336261 transcription factor bHLH153 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336261, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4336261
    Gene description
    transcription factor bHLH153
    Locus tag
    OSNPB_040493100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in milk grains (RPKM 99.9), leaves before flowering (RPKM 63.0) and 6 other tissues See more
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    Genomic context

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    See LOC4336261 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24655164..24660191, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene uncharacterized CRM domain-containing protein At3g25440, chloroplastic Neighboring gene B-box zinc finger protein 24 Neighboring gene uncharacterized LOC4336262 Neighboring gene chitinase 4-like Neighboring gene uncharacterized LOC107277699

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor bHLH153
    Names
    Os04g0493100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24655164..24660191 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781286.2 → XP_015636772.1  transcription factor bHLH153

      UniProtKB/TrEMBL
      A2XV27, A3AV65, Q25AC0, Q7X7U7
      Conserved Domains (1) summary
      cd11393
      Location:53 → 100
      bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins

    2. XM_015781285.2 → XP_015636771.1  transcription factor bHLH153

      UniProtKB/TrEMBL
      A2XV27, A3AV65, Q25AC0, Q7X7U7
      Conserved Domains (1) summary
      cd11393
      Location:53 → 100
      bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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