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    LOC4324909 G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324909, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4324909
    Gene description
    G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130
    Locus tag
    OSNPB_010889900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 7.1), flowers (RPKM 5.5) and 5 other tissues See more
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    Genomic context

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    See LOC4324909 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38688221..38692864, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene LOB domain-containing protein 6-like Neighboring gene rhodanese-like domain-containing protein 4A, chloroplastic Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in recognition of pollen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130
    Names
    B1099D03.46
    Os01g0889900
    putative S-receptor kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      38688221..38692864 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766224.2 → XP_015621710.1  G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130

      UniProtKB/TrEMBL
      A0A0P0VBF3, A3A0E0, Q8LQH1
      Conserved Domains (4) summary
      cd01098
      Location:379 → 457
      PAN_AP_plant; Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and ...
      cd14066
      Location:528 → 794
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam00954
      Location:233 → 343
      S_locus_glycop; S-locus glycoprotein domain
      pfam01453
      Location:93 → 199
      B_lectin; D-mannose binding lectin
    Nucleotide Protein
    Heading Accession and Version

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