LOC4341667 lysosomal Pro-X carboxypeptidase [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4341667
Gene description: lysosomal Pro-X carboxypeptidase
Locus tag: OSNPB_060647400
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Broad expression in leaves after flowering (RPKM 55.4), roots after flowering (RPKM 34.2) and 5 other tissues See more
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Genomic context

Location:: chromosome: 6

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	6	NC_029261.1 (26456371..26461814, complement)

Chromosome 6 - NC_029261.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables dipeptidyl-peptidase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables serine-type exopeptidase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in proteolysis	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: lysosomal Pro-X carboxypeptidase

Names: OSJNBa0062J02.12; Os06g0647400; putative prolylcarboxypeptidase

XP_015641049.1

EC 3.4.16.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001421667.1 → NP_001408596.1 lysosomal Pro-X carboxypeptidase precursor

Status: VALIDATED

Source sequence(s)

AK068457, AK103281

UniProtKB/TrEMBL

A0A0P0WZP6, B8B0R3, Q67WZ5

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029261.1 Reference IRGSP-1.0 Primary Assembly

Range

26456371..26461814 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015785563.2 → XP_015641049.1 lysosomal Pro-X carboxypeptidase

UniProtKB/TrEMBL

Q67WZ5

Conserved Domains (1) summary

cl21494
Location:89 → 509

Abhydrolase; alpha/beta hydrolases